ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5b43A4 - ECOD Domain | ECOD

ECOD/Domains/e5b43A4

e5b43A4

UID: 001830958

RepresentativePDB

Range: A:1073-1258
PDB: 5B43 chain A(all domains)
UniProt: U2UMQ6 (all domains)
Gene: cas12a

Molecule: CRISPR-associated endonuclease Cpf1

3D Structure

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Related Domains

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Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupCRISPR-associated endonuclease Cpf1 nuclease domain(1068)

HH-groupCRISPR-associated endonuclease Cpf1 nuclease domain(1068.1)

TT-groupCRISPR-associated endonuclease Cpf1 nuclease domain(1068.1.1)

FFamilyNUC(1068.1.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Nuclease domain

External Links

ECOD PDB View: 5B43 RCSB PDB: 5B43 PDBe: 5B43 UniProt: U2UMQ6

Downloads

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