ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5iv9A2 - ECOD Domain | ECOD

ECOD/Domains/e5iv9A2

e5iv9A2

UID: 001831544

PDB

Range: A:1-201
PDB: 5IV9 chain A(all domains)
UniProt: C4T9I0 (all domains)
Gene: imp

Molecule: LPS-assembly protein LptD

3D Structure

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Related Domains

Browse other domains in LptD_N →

Classification

AArchitecturebeta meanders(a.2)

XX-groupPeriplasmic lipopolysaccharide transport protein LptA (YhbN)(3523)

HH-groupPeriplasmic lipopolysaccharide transport protein LptA (YhbN)(3523.1)

TT-groupPeriplasmic lipopolysaccharide transport protein LptA (YhbN)(3523.1.1)

FFamilyLptD_N(3523.1.1.2)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive ((Hydroxyethyloxy)Tri(Ethyloxy)Octane)

(Hydroxyethyloxy)Tri(Ethyloxy)OctaneC8E
DrugBank DB04233

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

LptA/(LptD N-terminal domain) LPS transport protein

ClanCL0259OstA

External Links

ECOD PDB View: 5IV9 RCSB PDB: 5IV9 PDBe: 5IV9 UniProt: C4T9I0

Downloads

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