ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5ixmC1 - ECOD Domain | ECOD

ECOD/Domains/e5ixmC1

e5ixmC1

UID: 001831570

PDB

Range: C:1-556
PDB: 5IXM chain C(all domains)
UniProt: Q8ZIK3 (all domains)
Gene: lptD

Molecule: LPS-assembly protein LptD

3D Structure

Loading viewer...

Related Domains

Browse other domains in LptD →

Classification

AArchitecturebeta barrels(a.1)

XX-groupOuter membrane meander beta-barrels(5084)

HH-groupLPS-assembly protein LptD(5084.10)

TT-groupLPS-assembly protein LptD(5084.10.1)

FFamilyLptD(5084.10.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive ((Hydroxyethyloxy)Tri(Ethyloxy)Octane)

(Hydroxyethyloxy)Tri(Ethyloxy)OctaneC8E
DrugBank DB04233

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

LPS transport system D

ClanCL0193MBB

External Links

ECOD PDB View: 5IXM RCSB PDB: 5IXM PDBe: 5IXM UniProt: Q8ZIK3

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure