ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ixmE1 - ECOD Domain | ECOD

ECOD/Domains/e5ixmE1

e5ixmE1

UID: 001831571

PDB

Range: E:1-556
PDB: 5IXM chain E(all domains)
UniProt: Q8ZIK3 (all domains)
Gene: lptD

Molecule: LPS-assembly protein LptD

3D Structure

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Related Domains

Browse other domains in LptD →

Classification

AArchitecturebeta barrels(a.1)

XX-groupOuter membrane meander beta-barrels(5084)

HH-groupLPS-assembly protein LptD(5084.10)

TT-groupLPS-assembly protein LptD(5084.10.1)

FFamilyLptD(5084.10.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive ((Hydroxyethyloxy)Tri(Ethyloxy)Octane)

(Hydroxyethyloxy)Tri(Ethyloxy)OctaneC8E
DrugBank DB04233

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

LPS transport system D

ClanCL0193MBB

External Links

ECOD PDB View: 5IXM RCSB PDB: 5IXM PDBe: 5IXM UniProt: Q8ZIK3

Downloads

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