ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5jbvA1 - ECOD Domain | ECOD

ECOD/Domains/e5jbvA1

e5jbvA1

UID: 001831969

PDB

Range: A:1-76
PDB: 5JBV chain A(all domains)
UniProt: P62987 (all domains)
Gene: UBA52

Molecule: Ubiquitin

3D Structure

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Related Domains

Browse other domains in ubiquitin →

Classification

AArchitecturea+b two layers(a.11)

XX-groupbeta-Grasp(221)

HH-groupUbiquitin-related(221.1)

TT-groupUbiquitin-like(221.1.1)

FFamilyubiquitin(221.1.1.2)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Nitrate)

NitrateNO3
DrugBank DB14049

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00240ubiquitin

Ubiquitin family

ClanCL0072Ubiquitin

External Links

ECOD PDB View: 5JBV RCSB PDB: 5JBV PDBe: 5JBV UniProt: P62987

Downloads

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