ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3c5mA1 - ECOD Domain | ECOD

ECOD/Domains/e3c5mA1

e3c5mA1

UID: 001832896

RepresentativePDB

Range: A:2-387
PDB: 3C5M chain A(all domains)
UniProt: Q87K10 (all domains)
Gene: VPA0088

Molecule: Oligogalacturonate lyase

3D Structure

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Related Domains

Browse other domains in Pectate_lyase22 →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupbeta-propeller-like(5)

HH-groupbeta-propeller(5.1)

TT-group6-bladed(5.1.3)

FFamilyPectate_lyase22(5.1.3.31)

Ligands

in contact, ≤ 4 Å

MANGANESE (II) IONMN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF14583Pectate_lyase22

Oligogalacturonate lyase

ClanCL0186Beta_propeller

External Links

ECOD PDB View: 3C5M RCSB PDB: 3C5M PDBe: 3C5M UniProt: Q87K10

Downloads

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