ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4ebjB1 - ECOD Domain | ECOD

ECOD/Domains/e4ebjB1

e4ebjB1

UID: 001833080

PDB

Range: B:135-251
PDB: 4EBJ chain B(all domains)
UniProt: D0E7M2 (all domains)
Gene: ant(4')-IIb

Molecule: Aminoglycoside nucleotidyltransferase

3D Structure

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Related Domains

Browse other domains in Ant-IIb_sub-bd →

Classification

AArchitecturealpha bundles(a.7)

XX-groupFour-helical up-and-down bundle(601)

HH-groupHEPN(601.7)

TT-groupNucleotidyltransferase substrate binding subunit/domain(601.7.1)

FFamilyAnt-IIb_sub-bd(601.7.1.10)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Sulfate ion, 1,2-ETHANEDIOL)

Sulfate ionSO4
DrugBank DB14546
1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF18280Ant-IIb_sub-bd

Nucleotidyltransferase, substrate binding domain

ClanCL0291KNTase_C

External Links

ECOD PDB View: 4EBJ RCSB PDB: 4EBJ PDBe: 4EBJ UniProt: D0E7M2

Downloads

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