ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4ebkB3 - ECOD Domain | ECOD

ECOD/Domains/e4ebkB3

e4ebkB3

UID: 001833085

RepresentativePDB

Range: B:122-251
PDB: 4EBK chain B(all domains)
UniProt: D0E7M2 (all domains)
Gene: ant(4')-IIb

Molecule: Aminoglycoside nucleotidyltransferase

3D Structure

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Related Domains

Browse other domains in Ant-IIb_sub-bd →

Classification

AArchitecturealpha bundles(a.7)

XX-groupFour-helical up-and-down bundle(601)

HH-groupHEPN(601.7)

TT-groupNucleotidyltransferase substrate binding subunit/domain(601.7.1)

FFamilyAnt-IIb_sub-bd(601.7.1.10)

Ligands

in contact, ≤ 4 Å

TobramycinTOY
drugDrugBank DB00684
Chloride ionCL
Iodide ionIOD

Pfam Families

PF18280Ant-IIb_sub-bd

Nucleotidyltransferase, substrate binding domain

ClanCL0291KNTase_C

External Links

ECOD PDB View: 4EBK RCSB PDB: 4EBK PDBe: 4EBK UniProt: D0E7M2

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.