ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2o5jD5 - ECOD Domain | ECOD

ECOD/Domains/e2o5jD5

e2o5jD5

UID: 001833728

PDB

Range: D:1201-1271,D:1329-1505
PDB: 2O5J chain D(all domains)
UniProt: Q8RQE8 (all domains)
Gene: rpoC

Molecule: DNA-directed RNA polymerase beta' chain

3D Structure

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Related Domains

Browse other domains in RNA_pol_Rpb1_5 →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupcentral helical domain in RNA-polymerase beta-prime subunit(4954)

HH-groupcentral helical domain in RNA-polymerase beta-prime subunit(4954.1)

TT-groupcentral helical domain in RNA-polymerase beta-prime subunit(4954.1.1)

FFamilyRNA_pol_Rpb1_5(4954.1.1.1)

Ligands

in contact, ≤ 4 Å

alpha,beta-Methyleneadenosine 5'-triphosphateAPC
drugDrugBank DB02596
Zinc ionZN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF04998RNA_pol_Rpb1_5

RNA polymerase Rpb1, domain 5

External Links

ECOD PDB View: 2O5J RCSB PDB: 2O5J PDBe: 2O5J UniProt: Q8RQE8

Downloads

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