ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4qf9A2 - ECOD Domain | ECOD

ECOD/Domains/e4qf9A2

e4qf9A2

UID: 001834438

PDB

Range: A:5-107,A:215-254
PDB: 4QF9 chain A(all domains)
UniProt: P22756 (all domains)
Gene: Grik1

Molecule: Glutamate receptor ionotropic, kainate 1

3D Structure

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Related Domains

Browse other domains in Lig_chan-Glu_bd →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilyLig_chan-Glu_bd(7523.1.1.20)

Ligands

in contact, ≤ 4 Å

(2S)-2-amino-4-(2,3-dioxo-1,2,3,4-tetrahydroquinoxalin-6-yl)butanoic acid35K

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF10613Lig_chan-Glu_bd

Ligated ion channel L-glutamate- and glycine-binding site

ClanCL0177PBP

External Links

ECOD PDB View: 4QF9 RCSB PDB: 4QF9 PDBe: 4QF9 UniProt: P22756

Downloads

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