ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4qtfA3 - ECOD Domain | ECOD

ECOD/Domains/e4qtfA3

e4qtfA3

UID: 001834479

PDB

Range: A:59-250
PDB: 4QTF chain A(all domains)
UniProt: I6Y9J2 (all domains)
Gene: ldtB

Molecule: L,d-transpeptidase LdtB

3D Structure

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Related Domains

Browse other domains in Big_10 →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupImmunoglobulin-like beta-sandwich(11)

HH-groupImmunoglobulin-related(11.1)

TT-groupImmunoglobulin/Fibronectin type III/E set domains/PapD-like(11.1.1)

FFamilyBig_10(11.1.1.250)

Ligands

in contact, ≤ 4 Å

2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE(BETA1-4)-2-ACETAMIDO-1,6-ANHYDRO-3-O-[(R)-1-CARBOXYETHYL]-2-DEOXY-BETA-D-GLUCOPYRANOSE-L-ALANYL-GAMMA-D-GLUTAMYL-MESO-DIAMINOPIMELYL-D-ALANINEMLD
drugDrugBank DB04736

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Bacterial Ig domain

ClanCL0159E-set

External Links

ECOD PDB View: 4QTF RCSB PDB: 4QTF PDBe: 4QTF UniProt: I6Y9J2

Downloads

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