ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4ff1B1 - ECOD Domain | ECOD

ECOD/Domains/e4ff1B1

e4ff1B1

UID: 001837262

PDB

Range: B:551-597,B:918-1100
PDB: 4FF1 chain B(all domains)
UniProt: Q859P9 (all domains)
Gene: 50

Molecule: Virion RNA polymerase

3D Structure

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Related Domains

Browse other domains in vRNAP_dom →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48)

TT-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48.1)

FFamilyvRNAP_dom(304.48.1.29)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Phosphate ion)

Phosphate ionPO4
DrugBank DB14523within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF21769vRNAP_dom

Virion DNA-directed RNA polymerase domain

External Links

ECOD PDB View: 4FF1 RCSB PDB: 4FF1 PDBe: 4FF1 UniProt: Q859P9

Downloads

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