ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5cd1E2 - ECOD Domain | ECOD

ECOD/Domains/e5cd1E2

e5cd1E2

UID: 001837958

PDB

Range: E:18-163
PDB: 5CD1 chain E(all domains)
UniProt: Q9UJA5 (all domains)
Gene: TRMT6

Molecule: tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6

3D Structure

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Related Domains

Browse other domains in Gcd10p →

Classification

AArchitecturea+b two layers(a.11)

XX-groupFKBP-like(284)

HH-groupFKBP-like(284.1)

TT-groupFKBP-like(284.1.1)

FFamilyGcd10p(284.1.1.5)

Ligands

in contact, ≤ 4 Å

S-adenosyl-L-homocysteineSAH
drugDrugBank DB01752

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Gcd10p family

External Links

ECOD PDB View: 5CD1 RCSB PDB: 5CD1 PDBe: 5CD1 UniProt: Q9UJA5

Downloads

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