ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5jmfA1 - ECOD Domain | ECOD

ECOD/Domains/e5jmfA1

e5jmfA1

UID: 001839430

PDB

Range: A:23-394
PDB: 5JMF chain A(all domains)
UniProt: Q89YS4 (all domains)
Gene: BT_4657

Molecule: Heparinase III protein

3D Structure

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Related Domains

Browse other domains in Hepar_II_III_N →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupalpha/alpha toroid(109.2)

TT-groupalpha/alpha toroid(109.2.1)

FFamilyHepar_II_III_N(109.2.1.35)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metalwithin 5 Å only

+ 1 additive (Tromethamine)

TromethamineTRS
DrugBank DB03754

Shown in the structure viewer.

Pfam Families

PF16889Hepar_II_III_N

Heparinase II/III N-terminus

ClanCL00596_Hairpin

External Links

ECOD PDB View: 5JMF RCSB PDB: 5JMF PDBe: 5JMF UniProt: Q89YS4

Downloads

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Drug annotations from DrugDomain.