ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5jmfA2 - ECOD Domain | ECOD

ECOD/Domains/e5jmfA2

e5jmfA2

UID: 001839431

PDB

Range: A:395-666
PDB: 5JMF chain A(all domains)
UniProt: Q89YS4 (all domains)
Gene: BT_4657

Molecule: Heparinase III protein

3D Structure

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Related Domains

Browse other domains in Hepar_II_III →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupGlycosyl hydrolase domain-like(12)

HH-groupsupersandwich(12.3)

TT-groupsupersandwich(12.3.1)

FFamilyHepar_II_III(12.3.1.14)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal

+ 2 additives (Glycerin, Tromethamine)

GlycerinGOL
DrugBank DB09462
Tromethamine

Pfam Families

PF07940Hepar_II_III_C

Heparinase II/III-like, C-terminal

ClanCL0103Gal_mutarotase

External Links

ECOD PDB View: 5JMF RCSB PDB: 5JMF PDBe: 5JMF UniProt: Q89YS4

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB03754

Shown in the structure viewer. Drug annotations from DrugDomain.