ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5dvaA2 - ECOD Domain | ECOD

ECOD/Domains/e5dvaA2

e5dvaA2

UID: 001840178

PDB

Range: A:63-163
PDB: 5DVA chain A(all domains)
UniProt: Q6XEC0 (all domains)
Gene: OXA-48

Molecule: Beta-lactamase

3D Structure

Loading viewer...

Related Domains

Browse other domains in Transpeptidase →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupalpha-helical domain in beta-lactamase/transpeptidase-like proteins(4019)

HH-groupalpha-helical domain in beta-lactamase/transpeptidase-like proteins(4019.1)

TT-groupalpha-helical domain in beta-lactamase/transpeptidase-like proteins(4019.1.1)

FFamilyTranspeptidase(4019.1.1.3)

Ligands

in contact, ≤ 4 Å

3-(pyridin-4-yl)benzoic acid5FL

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00905Transpeptidase

Penicillin binding protein transpeptidase domain

ClanCL0013Beta-lactamase

External Links

ECOD PDB View: 5DVA RCSB PDB: 5DVA PDBe: 5DVA UniProt: Q6XEC0

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure