ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5hyoA2 - ECOD Domain | ECOD

ECOD/Domains/e5hyoA2

e5hyoA2

UID: 001840546

PDB

Range: A:186-301
PDB: 5HYO chain A(all domains)
UniProt: U6BPB2 (all domains)
Gene: ORF1a

Molecule: PEDV 3CLpro

3D Structure

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Related Domains

Browse other domains in Peptidase_C30 →

Classification

AArchitecturealpha arrays(a.6)

XX-groupCoronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain(6001)

HH-groupCoronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain(6001.1)

TT-groupCoronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain(6001.1.1)

FFamilyPeptidase_C30(6001.1.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives ((4r)-2-Methylpentane-2,4-Diol, Isopropyl alcohol)

(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564
Isopropyl alcoholIPA

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF05409Peptidase_C30

Coronavirus endopeptidase C30

ClanCL0124Peptidase_PA

External Links

ECOD PDB View: 5HYO RCSB PDB: 5HYO PDBe: 5HYO UniProt: U6BPB2

Downloads

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