ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5jb2A1 - ECOD Domain | ECOD

ECOD/Domains/e5jb2A1

e5jb2A1

UID: 001840654

PDB

Range: A:2-207,A:459-531
PDB: 5JB2 chain A(all domains)
UniProt: G0YYQ5 (all domains)

Molecule: LGP2

3D Structure

Loading viewer...

Related Domains

Browse other domains in ResIII →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyResIII(2004.1.1.120)

Ligands

in contact, ≤ 4 Å

Adenosine disphosphateADP
drugDrugBank DB16833
Tetrafluoroaluminate IonALF
drugDrugBank DB04444

Pfam Families

Type III restriction enzyme, res subunit

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 5JB2 RCSB PDB: 5JB2 PDBe: 5JB2 UniProt: G0YYQ5

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Magnesium ion

metal

Shown in the structure viewer. Drug annotations from DrugDomain.