ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5jb8S1 - ECOD Domain | ECOD

ECOD/Domains/e5jb8S1

e5jb8S1

UID: 001840658

PDB

Range: S:16-245
PDB: 5JB8 chain S(all domains)
UniProt: P00740 (all domains)
Gene: F9

Molecule: Coagulation factor IX

3D Structure

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Related Domains

Browse other domains in Trypsin →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupFMN-binding split barrel 2(1.1.17)

FFamilyTrypsin(1.1.17.1)

Ligands

in contact, ≤ 4 Å

L-alpha-glutamyl-N-{(1S)-4-{[amino(iminio)methyl]amino}-1-[(1S)-2-chloro-1-hydroxyethyl]butyl}glycinamide0GJ
Calcium ionCA
metal

+ 1 additive (Dimethyl sulfoxide)

Dimethyl sulfoxide

Pfam Families

PF00089Trypsin

Trypsin

ClanCL0124Peptidase_PA

External Links

ECOD PDB View: 5JB8 RCSB PDB: 5JB8 PDBe: 5JB8 UniProt: P00740

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB01093

Shown in the structure viewer. Drug annotations from DrugDomain.