ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5jbgA2 - ECOD Domain | ECOD

ECOD/Domains/e5jbgA2

e5jbgA2

UID: 001840668

PDB

Range: A:2-207,A:459-531
PDB: 5JBG chain A(all domains)
UniProt: G0YYQ5 (all domains)

Molecule: LGP2

3D Structure

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Related Domains

Browse other domains in ResIII →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyResIII(2004.1.1.120)

Ligands

in contact, ≤ 4 Å

Adenosine disphosphateADP
drugDrugBank DB16833
Tetrafluoroaluminate IonALF
drugDrugBank DB04444

Pfam Families

Type III restriction enzyme, res subunit

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 5JBG RCSB PDB: 5JBG PDBe: 5JBG UniProt: G0YYQ5

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Magnesium ion

metal

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.