ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3m62A1 - ECOD Domain | ECOD

ECOD/Domains/e3m62A1

e3m62A1

UID: 001840986

RepresentativePDB

Range: A:1-879
PDB: 3M62 chain A(all domains)
UniProt: P54860 (all domains)
Gene: UFD2

Molecule: Ubiquitin conjugation factor E4

3D Structure

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Related Domains

Browse other domains in Ufd2P_core →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupARM repeat(109.4)

TT-groupARM repeat(109.4.1)

FFamilyUfd2P_core(109.4.1.150)

Ligands

in contact, ≤ 4 Å

Potassium ionK
metal

+ 1 additive (Pentaethylene glycol)

Pentaethylene glycol1PE

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF10408Ufd2P_core

Ubiquitin elongating factor core

ClanCL0020TPR

External Links

ECOD PDB View: 3M62 RCSB PDB: 3M62 PDBe: 3M62 UniProt: P54860

Downloads

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