ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ca6A1 - ECOD Domain | ECOD

ECOD/Domains/e5ca6A1

e5ca6A1

UID: 001841225

PDB

Range: A:67-224
PDB: 5CA6 chain A(all domains)
UniProt: A0A1A9TAH8 (all domains)

Molecule: porcine rotavirus TFR-41 VP8*

3D Structure

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Related Domains

Browse other domains in VP4_haemagglut →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupConcanavalin A-like(10.1)

TT-groupConcanavalin A-like lectins/glucanases(10.1.1)

FFamilyVP4_haemagglut(10.1.1.6)

Ligands

in contact, ≤ 4 Å

Palmitic AcidPLM
drugDrugBank DB03796

+ 2 additives (Formic acid, Glycerin)

Formic acidFMT
DrugBank DB01942

Pfam Families

PF00426VP4_haemagglut

Outer Capsid protein VP4 (Hemagglutinin) Concanavalin-like domain

ClanCL0004Concanavalin

External Links

ECOD PDB View: 5CA6 RCSB PDB: 5CA6 PDBe: 5CA6 UniProt: A0A1A9TAH8

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Glycerin

DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.