ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3qidA2 - ECOD Domain | ECOD

ECOD/Domains/e3qidA2

e3qidA2

UID: 000184259

PDB

Range: A:385-498
PDB: 3QID chain A(all domains)
UniProt: Q80J95 (all domains)
Gene: ORF1

Molecule: RNA dependent RNA polymerase

3D Structure

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Related Domains

Browse other domains in RdRP_1 →

Classification

AArchitecturealpha bundles(a.7)

XX-grouphelical bundle domain in reverse transcriptase-like polymerases(4967)

HH-grouphelical bundle domain in reverse transcriptase-like polymerases(4967.1)

TT-grouphelical bundle domain in reverse transcriptase-like polymerases(4967.1.1)

FFamilyRdRP_1(4967.1.1.2)

Ligands

in contact, ≤ 4 Å

MANGANESE (III) IONMN3
metalwithin 5 Å only

+ 2 additives (Sulfate ion, Glycerol)

Sulfate ionSO4
DrugBank DB14546

Pfam Families

Viral RNA-dependent RNA polymerase

ClanCL0027RdRP

External Links

ECOD PDB View: 3QID RCSB PDB: 3QID PDBe: 3QID UniProt: Q80J95

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Glycerol

Shown in the structure viewer. Drug annotations from DrugDomain.