ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5c54C1 - ECOD Domain | ECOD

ECOD/Domains/e5c54C1

e5c54C1

UID: 001842692

PDB

Range: C:3-312
PDB: 5C54 chain C(all domains)
UniProt: Q8NMD2 (all domains)
Gene: Cgl2646

Molecule: Dihydrodipicolinate synthase/N-acetylneuraminate lyase

3D Structure

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Related Domains

Browse other domains in DHDPS →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyDHDPS(2002.1.1.29)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Dihydrodipicolinate synthetase family

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 5C54 RCSB PDB: 5C54 PDBe: 5C54 UniProt: Q8NMD2

Downloads

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