ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5c55B1 - ECOD Domain | ECOD

ECOD/Domains/e5c55B1

e5c55B1

UID: 001842699

PDB

Range: B:5-310
PDB: 5C55 chain B(all domains)
UniProt: Q8NMD2 (all domains)
Gene: Cgl2646

Molecule: Dihydrodipicolinate synthase/N-acetylneuraminate lyase

3D Structure

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Related Domains

Browse other domains in DHDPS →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyDHDPS(2002.1.1.29)

Ligands

in contact, ≤ 4 Å

Pyruvic acidPYR
drugDrugBank DB00119

+ 3 additives (Acetate, Glycerin, 1,2-ETHANEDIOL)

AcetateACT
DrugBank DB14511

Pfam Families

Dihydrodipicolinate synthetase family

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 5C55 RCSB PDB: 5C55 PDBe: 5C55 UniProt: Q8NMD2

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Glycerin

DrugBank DB09462

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.