ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5d79B2 - ECOD Domain | ECOD

ECOD/Domains/e5d79B2

e5d79B2

UID: 001842753

PDB

Range: B:250-530
PDB: 5D79 chain B(all domains)
UniProt: Q9FI21 (all domains)
Gene: At5g44440

Molecule: Berberine bridge enzyme-like protein

3D Structure

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Related Domains

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Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupFAD-linked oxidases, C-terminal domain(304.6)

TT-groupFAD-linked oxidases, C-terminal domain(304.6.1)

FFamilyBBE(304.6.1.3)

Ligands

in contact, ≤ 4 Å

Flavin adenine dinucleotideFAD
drugDrugBank DB03147

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Berberine and berberine like

ClanCL0277FAD-oxidase_C

External Links

ECOD PDB View: 5D79 RCSB PDB: 5D79 PDBe: 5D79 UniProt: Q9FI21

Downloads

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