ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5fx5A1 - ECOD Domain | ECOD

ECOD/Domains/e5fx5A1

e5fx5A1

UID: 001842930

PDB

Range: A:1-180
PDB: 5FX5 chain A(all domains)
UniProt: P04936 (all domains)

Molecule: RHINOVIRUS 3C PROTEASE

3D Structure

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Related Domains

Browse other domains in Peptidase_C3 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupFMN-binding split barrel 2(1.1.17)

FFamilyPeptidase_C3(1.1.17.2)

Ligands

in contact, ≤ 4 Å

ethyl (4R)-4-[[(2S,3R)-1-[(2S)-3-methyl-2-[(5-methyl-1,2-oxazol-3-yl)carbonylamino]butanoyl]-3-phenyl-pyrrolidin-2-yl]carbonylamino]-5-[(3S)-2-oxidanylidenepyrrolidin-3-yl]pentanoateHOV

+ 3 additives (Glycerin, Triethylene glycol, Tetraethylene glycol)

GlycerinGOL
DrugBank DB09462

Pfam Families

PF00548Peptidase_C3

3C cysteine protease (picornain 3C)

ClanCL0124Peptidase_PA

External Links

ECOD PDB View: 5FX5 RCSB PDB: 5FX5 PDBe: 5FX5 UniProt: P04936

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Triethylene glycolPGE

DrugBank DB02327

Tetraethylene glycolPG4

Shown in the structure viewer. Drug annotations from DrugDomain.