ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5kfmA1 - ECOD Domain | ECOD

ECOD/Domains/e5kfmA1

e5kfmA1

UID: 001843230

PDB

Range: A:-2-27,A:88-242
PDB: 5KFM chain A(all domains)
UniProt: Q9Y253 (all domains)
Gene: POLH

Molecule: DNA polymerase eta

3D Structure

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Related Domains

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Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48)

TT-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48.1)

FFamilyIMS(304.48.1.10)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal
2'-DEOXYADENOSINE 5'-O-(1-THIOTRIPHOSPHATE)STP

+ 1 additive (Glycerin)

GlycerinGOL

Pfam Families

impB/mucB/samB family

External Links

ECOD PDB View: 5KFM RCSB PDB: 5KFM PDBe: 5KFM UniProt: Q9Y253

Downloads

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DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.