ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5a8jA3 - ECOD Domain | ECOD

ECOD/Domains/e5a8jA3

e5a8jA3

UID: 001843711

RepresentativePDB

Range: A:281-366
PDB: 5A8J chain A(all domains)
UniProt: Q4J9H5 (all domains)
Gene: Saci_1209

Molecule: VWA2

3D Structure

Loading viewer...

Related Domains

Browse other domains in ArnB_C →

Classification

AArchitecturealpha bundles(a.7)

XX-groupFour-helical up-and-down bundle(601)

HH-groupvWA2 C-terminal domain(601.48)

TT-groupvWA2 C-terminal domain(601.48.1)

FFamilyArnB_C(601.48.1.1)

Ligands

in contact, ≤ 4 Å

Sodium ionNA
metal
Chloride ionCL
within 5 Å only

+ 3 additives (Citric acid, Sulfate ion, Glycerol)

Citric acidCIT

Pfam Families

Archaellum regulatory network B, C-terminal domain

External Links

ECOD PDB View: 5A8J RCSB PDB: 5A8J PDBe: 5A8J UniProt: Q4J9H5

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB04272

Sulfate ionSO4

DrugBank DB14546

GlycerolGOL

Shown in the structure viewer. Drug annotations from DrugDomain.