ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5caeB1 - ECOD Domain | ECOD

ECOD/Domains/e5caeB1

e5caeB1

UID: 001844140

PDB

Range: B:246-393
PDB: 5CAE chain B(all domains)
UniProt: P53590 (all domains)
Gene: SUCLG2

Molecule: Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial

3D Structure

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Related Domains

Browse other domains in Ligase_CoA →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFlavodoxin-like(2007)

HH-groupSuccinyl-CoA synthetase domains(2007.3)

TT-groupSuccinyl-CoA synthetase domains(2007.3.1)

FFamilyLigase_CoA(2007.3.1.1)

Ligands

in contact, ≤ 4 Å

Coenzyme ACOA
drugDrugBank DB01992
Succinic acidSIN
drugDrugBank DB00139
Magnesium ion

Pfam Families

PF00549Ligase_CoA

CoA-ligase

ClanCL0506Succ_CoA_synth

External Links

ECOD PDB View: 5CAE RCSB PDB: 5CAE PDBe: 5CAE UniProt: P53590

Downloads

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metalwithin 5 Å only

+ 1 additive (Phosphate ion)

Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.