ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5jgfB2 - ECOD Domain | ECOD

ECOD/Domains/e5jgfB2

e5jgfB2

UID: 001844391

PDB

Range: B:138-281
PDB: 5JGF chain B(all domains)
UniProt: P14904 (all domains)
Gene: APE1

Molecule: Vacuolar aminopeptidase 1

3D Structure

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Related Domains

Browse other domains in Peptidase_M18 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupAlanine racemase-C(1.1.7)

FFamilyPeptidase_M18(1.1.7.15)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metalwithin 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF02127Peptidase_M18

Aminopeptidase I zinc metalloprotease (M18)

ClanCL0865ZnExoPePases

External Links

ECOD PDB View: 5JGF RCSB PDB: 5JGF PDBe: 5JGF UniProt: P14904

Downloads

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