ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5jgfC2 - ECOD Domain | ECOD

ECOD/Domains/e5jgfC2

e5jgfC2

UID: 001844393

PDB

Range: C:47-137,C:282-511
PDB: 5JGF chain C(all domains)
UniProt: P14904 (all domains)
Gene: APE1

Molecule: Vacuolar aminopeptidase 1

3D Structure

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Related Domains

Browse other domains in Peptidase_M18 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPhosphorylase/hydrolase-like(2011)

HH-groupZn-dependent exopeptidases(2011.1)

TT-groupZn-dependent exopeptidases(2011.1.1)

FFamilyPeptidase_M18(2011.1.1.7)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF02127Peptidase_M18

Aminopeptidase I zinc metalloprotease (M18)

ClanCL0865ZnExoPePases

External Links

ECOD PDB View: 5JGF RCSB PDB: 5JGF PDBe: 5JGF UniProt: P14904

Downloads

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