ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5jh9A1 - ECOD Domain | ECOD

ECOD/Domains/e5jh9A1

e5jh9A1

UID: 001844406

PDB

Range: A:138-281
PDB: 5JH9 chain A(all domains)
UniProt: P14904 (all domains)
Gene: APE1

Molecule: Vacuolar aminopeptidase 1

3D Structure

Loading viewer...

Related Domains

Browse other domains in Peptidase_M18 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupAlanine racemase-C(1.1.7)

FFamilyPeptidase_M18(1.1.7.15)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metalwithin 5 Å only

+ 1 additive (Cacodylate ion)

Cacodylate ionCAC

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF02127Peptidase_M18

Aminopeptidase I zinc metalloprotease (M18)

ClanCL0865ZnExoPePases

External Links

ECOD PDB View: 5JH9 RCSB PDB: 5JH9 PDBe: 5JH9 UniProt: P14904

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure