ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5jh9C1 - ECOD Domain | ECOD

ECOD/Domains/e5jh9C1

e5jh9C1

UID: 001844410

PDB

Range: C:35-137,C:282-512
PDB: 5JH9 chain C(all domains)
UniProt: P14904 (all domains)
Gene: APE1

Molecule: Vacuolar aminopeptidase 1

3D Structure

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Related Domains

Browse other domains in Peptidase_M18 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPhosphorylase/hydrolase-like(2011)

HH-groupZn-dependent exopeptidases(2011.1)

TT-groupZn-dependent exopeptidases(2011.1.1)

FFamilyPeptidase_M18(2011.1.1.7)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

+ 1 additive (Cacodylate ion)

Cacodylate ionCAC

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF02127Peptidase_M18

Aminopeptidase I zinc metalloprotease (M18)

ClanCL0865ZnExoPePases

External Links

ECOD PDB View: 5JH9 RCSB PDB: 5JH9 PDBe: 5JH9 UniProt: P14904

Downloads

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