ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5jh9D1 - ECOD Domain | ECOD

ECOD/Domains/e5jh9D1

e5jh9D1

UID: 001844412

PDB

Range: D:138-281
PDB: 5JH9 chain D(all domains)
UniProt: P14904 (all domains)
Gene: APE1

Molecule: Vacuolar aminopeptidase 1

3D Structure

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Related Domains

Browse other domains in Peptidase_M18 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupAlanine racemase-C(1.1.7)

FFamilyPeptidase_M18(1.1.7.15)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metalwithin 5 Å only

+ 1 additive (Cacodylate ion)

Cacodylate ionCAC

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF02127Peptidase_M18

Aminopeptidase I zinc metalloprotease (M18)

ClanCL0865ZnExoPePases

External Links

ECOD PDB View: 5JH9 RCSB PDB: 5JH9 PDBe: 5JH9 UniProt: P14904

Downloads

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