ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4v8sAY3 - ECOD Domain | ECOD

ECOD/Domains/e4v8sAY3

e4v8sAY3

UID: 001853690

PDB

Range: AY:66-115,AY:276-394
PDB: 4V8S chain AY(all domains)
UniProt: B8YB54 (all domains)
Gene: rpo1C

Molecule: DNA-DIRECTED RNA POLYMERASE SUBUNIT A''

3D Structure

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Related Domains

Browse other domains in RNA_pol_Rpb1_5 →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupcentral helical domain in RNA-polymerase beta-prime subunit(4954)

HH-groupcentral helical domain in RNA-polymerase beta-prime subunit(4954.1)

TT-groupcentral helical domain in RNA-polymerase beta-prime subunit(4954.1.1)

FFamilyRNA_pol_Rpb1_5(4954.1.1.1)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF04998RNA_pol_Rpb1_5

RNA polymerase Rpb1, domain 5

External Links

ECOD PDB View: 4V8S RCSB PDB: 4V8S PDBe: 4V8S UniProt: B8YB54

Downloads

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