ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5jqsA1 - ECOD Domain | ECOD

ECOD/Domains/e5jqsA1

e5jqsA1

UID: 001854612

PDB

Range: A:111-367
PDB: 5JQS chain A(all domains)
UniProt: Q8N5J2 (all domains)
Gene: MINDY1

Molecule: Protein FAM63A

3D Structure

Loading viewer...

Related Domains

Browse other domains in MINDY_DUB →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupCysteine proteinases-like(219)

HH-groupCysteine proteinases(219.1)

TT-groupCysteine proteinases(219.1.1)

FFamilyMINDY_DUB(219.1.1.23)

Ligands

in contact, ≤ 4 Å

prop-2-en-1-amineAYE
Chloride ionCL

+ 2 additives (1,4-Dioxane, Sulfate ion)

1,4-DioxaneDIO

Pfam Families

PF04424MINDY_DUB

MINDY deubiquitinase

ClanCL0125Peptidase_CA

External Links

ECOD PDB View: 5JQS RCSB PDB: 5JQS PDBe: 5JQS UniProt: Q8N5J2

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB03316

Sulfate ionSO4

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.