ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5apgB1 - ECOD Domain | ECOD

ECOD/Domains/e5apgB1

e5apgB1

UID: 001855571

PDB

Range: B:1-184
PDB: 5APG chain B(all domains)
UniProt: E1QU22 (all domains)
Gene: Vdis_0418

Molecule: TSR3

3D Structure

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Related Domains

Browse other domains in Ribo_biogen_C →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupalpha/beta knot(2488)

HH-groupalpha/beta knot(2488.1)

TT-groupalpha/beta knot(2488.1.1)

FFamilyRibo_biogen_C(2488.1.1.9)

Ligands

in contact, ≤ 4 Å

[(3S)-3-amino-4-hydroxy-4-oxo-butyl]-[[(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl]-methyl-selaniumEEM

+ 1 additive (2-(N-morpholino)ethanesulfonic acid)

2-(N-morpholino)ethanesulfonic acidMES
DrugBank DB03814

Shown in the structure viewer.

Pfam Families

PF04034Ribo_biogen_C

Ribosome biogenesis protein, C-terminal

ClanCL0098SPOUT

External Links

ECOD PDB View: 5APG RCSB PDB: 5APG PDBe: 5APG UniProt: E1QU22

Downloads

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Drug annotations from DrugDomain.