ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5iitA1 - ECOD Domain | ECOD

ECOD/Domains/e5iitA1

e5iitA1

UID: 001855734

PDB

Range: A:181-367
PDB: 5IIT chain A(all domains)
UniProt: P47075 (all domains)
Gene: VTC4

Molecule: Vacuolar transporter chaperone 4,Core histone macro-H2A.1

3D Structure

Loading viewer...

Related Domains

Browse other domains in Macro →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupMacro domain-like(7529)

HH-groupMacro domain-like(7529.1)

TT-groupMacro domain-like(7529.1.1)

FFamilyMacro(7529.1.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (2-(N-morpholino)ethanesulfonic acid, 1,2-ETHANEDIOL)

2-(N-morpholino)ethanesulfonic acidMES
DrugBank DB03814
1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Macro domain

ClanCL0223MACRO

External Links

ECOD PDB View: 5IIT RCSB PDB: 5IIT PDBe: 5IIT UniProt: P47075

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure