ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5iitB1 - ECOD Domain | ECOD

ECOD/Domains/e5iitB1

e5iitB1

UID: 001855736

PDB

Range: B:181-367
PDB: 5IIT chain B(all domains)
UniProt: P47075 (all domains)
Gene: VTC4

Molecule: Vacuolar transporter chaperone 4,Core histone macro-H2A.1

3D Structure

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Related Domains

Browse other domains in Macro →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupMacro domain-like(7529)

HH-groupMacro domain-like(7529.1)

TT-groupMacro domain-like(7529.1.1)

FFamilyMacro(7529.1.1.1)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal

+ 2 additives (2-(N-morpholino)ethanesulfonic acid, Sulfate ion)

2-(N-morpholino)ethanesulfonic acidMES
DrugBank DB03814

Pfam Families

Macro domain

ClanCL0223MACRO

External Links

ECOD PDB View: 5IIT RCSB PDB: 5IIT PDBe: 5IIT UniProt: P47075

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Sulfate ion

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.