ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4dtdA1 - ECOD Domain | ECOD

ECOD/Domains/e4dtdA1

e4dtdA1

UID: 000185695

RepresentativePDB

Range: A:1-354
PDB: 4DTD chain A(all domains)
UniProt: A5F8C0 (all domains)

Molecule: VgrG protein

3D Structure

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Related Domains

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Classification

AArchitecturea+b two layers(a.11)

XX-groupGlutamine synthetase-like(321)

HH-groupC-terminal domain in VgrG(321.3)

TT-groupC-terminal domain in VgrG(321.3.1)

FFamilyACD(321.3.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Actin cross-linking domain

External Links

ECOD PDB View: 4DTD RCSB PDB: 4DTD PDBe: 4DTD UniProt: A5F8C0

Downloads

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