ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5j4dW2 - ECOD Domain | ECOD

ECOD/Domains/e5j4dW2

e5j4dW2

UID: 001857196

PDB

Range: W:93-189
PDB: 5J4D chain W(all domains)
UniProt: Q72IA7 (all domains)
Gene: rplY

Molecule: 50S ribosomal protein L25

3D Structure

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Related Domains

Browse other domains in Ribosomal_TL5_C →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupRibosomal protein TL5/L25 C-terminal domain-like(240)

HH-groupRibosomal protein TL5/L25 C-terminal domain-related(240.1)

TT-groupRibosomal protein TL5/L25 C-terminal domain-related(240.1.1)

FFamilyRibosomal_TL5_C(240.1.1.2)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal

Shown in the structure viewer.

Pfam Families

PF14693Ribosomal_TL5_C

Ribosomal protein TL5, C-terminal domain

External Links

ECOD PDB View: 5J4D RCSB PDB: 5J4D PDBe: 5J4D UniProt: Q72IA7

Downloads

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