ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ag8A2 - ECOD Domain | ECOD

ECOD/Domains/e5ag8A2

e5ag8A2

UID: 001857641

PDB

Range: A:579-662
PDB: 5AG8 chain A(all domains)
UniProt: P95493 (all domains)
Gene: rgpB

Molecule: GINGIPAIN R2

3D Structure

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Related Domains

Browse other domains in Peptidase_C25_C →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupImmunoglobulin-like beta-sandwich(11)

HH-groupImmunoglobulin-related(11.1)

TT-groupImmunoglobulin/Fibronectin type III/E set domains/PapD-like(11.1.1)

FFamilyPeptidase_C25_C(11.1.1.62)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Sulfate ion, Glycerol)

Sulfate ionSO4
DrugBank DB14546
GlycerolGOL

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF03785Peptidase_C25_C

Peptidase family C25, C terminal ig-like domain

ClanCL0159E-set

External Links

ECOD PDB View: 5AG8 RCSB PDB: 5AG8 PDBe: 5AG8 UniProt: P95493

Downloads

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