ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5hfsB1 - ECOD Domain | ECOD

ECOD/Domains/e5hfsB1

e5hfsB1

UID: 001857812

PDB

Range: B:672-736
PDB: 5HFS chain B(all domains)
UniProt: P95493 (all domains)
Gene: rgpB

Molecule: Gingipain R2

3D Structure

Loading viewer...

Related Domains

Browse other domains in Peptidase_M60_C →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupImmunoglobulin-like beta-sandwich(11)

HH-groupImmunoglobulin-related(11.1)

TT-groupImmunoglobulin/Fibronectin type III/E set domains/PapD-like(11.1.1)

FFamilyPeptidase_M60_C(11.1.1.276)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF18630Peptidase_M60_C

Peptidase M60 C-terminal domain

ClanCL0159E-set

External Links

ECOD PDB View: 5HFS RCSB PDB: 5HFS PDBe: 5HFS UniProt: P95493

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure