ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5d4cM3 - ECOD Domain | ECOD

ECOD/Domains/e5d4cM3

e5d4cM3

UID: 001859500

PDB

Range: M:1-94,M:115-141,M:331-457
PDB: 5D4C chain M(all domains)
UniProt: Q8RQE9 (all domains)
Gene: rpoB

Molecule: DNA-directed RNA polymerase subunit beta

3D Structure

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Related Domains

Browse other domains in RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupN-terminal domain in beta subunit of DNA dependent RNA-polymerase(4010)

HH-groupN-terminal domain in beta subunit of DNA dependent RNA-polymerase(4010.1)

TT-groupN-terminal domain in beta subunit of DNA dependent RNA-polymerase(4010.1.1)

FFamilyRNA_pol_Rpb2_1,RNA_pol_Rpb2_3(4010.1.1.2)

Ligands

in contact, ≤ 4 Å

ATPATP
drugDrugBank DB00171
Cytidine-5'-MonophosphateC5P
drugDrugBank DB03403within 5 Å only

Shown in the structure viewer.

Pfam Families

PF04563RNA_pol_Rpb2_1

RNA polymerase beta subunit

PF04565RNA_pol_Rpb2_3

RNA polymerase Rpb2, domain 3

External Links

ECOD PDB View: 5D4C RCSB PDB: 5D4C PDBe: 5D4C UniProt: Q8RQE9

Downloads

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Drug annotations from DrugDomain.