ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5d4cM7 - ECOD Domain | ECOD

ECOD/Domains/e5d4cM7

e5d4cM7

UID: 001859504

PDB

Range: M:663-700,M:827-999
PDB: 5D4C chain M(all domains)
UniProt: Q8RQE9 (all domains)
Gene: rpoB

Molecule: DNA-directed RNA polymerase subunit beta

3D Structure

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Related Domains

Browse other domains in RNA_pol_Rpb2_6 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupdouble psi(1.1.2)

FFamilyRNA_pol_Rpb2_6(1.1.2.1)

Ligands

in contact, ≤ 4 Å

Cytidine-5'-TriphosphateCTP
drugDrugBank DB02431
ATPATP
drugDrugBank DB00171within 5 Å only

Pfam Families

PF00562RNA_pol_Rpb2_6

RNA polymerase Rpb2, domain 6

ClanCL0410LEF-8-like

External Links

ECOD PDB View: 5D4C RCSB PDB: 5D4C PDBe: 5D4C UniProt: Q8RQE9

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Cytidine-5'-MonophosphateC5P

drugDrugBank DB03403within 5 Å only

Magnesium ionMG

metal

Shown in the structure viewer. Drug annotations from DrugDomain.