ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5d4dM5 - ECOD Domain | ECOD

ECOD/Domains/e5d4dM5

e5d4dM5

UID: 001859556

PDB

Range: M:458-591
PDB: 5D4D chain M(all domains)
UniProt: Q8RQE9 (all domains)
Gene: rpoB

Molecule: DNA-directed RNA polymerase subunit beta

3D Structure

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Related Domains

Browse other domains in RNA_pol_Rpb2_45 →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupbarrel domain in beta subunit of DNA dependent RNA-polymerase(4042)

HH-groupbarrel domain in beta subunit of DNA dependent RNA-polymerase(4042.1)

TT-groupbarrel domain in beta subunit of DNA dependent RNA-polymerase(4042.1.1)

FFamilyRNA_pol_Rpb2_45(4042.1.1.4)

Ligands

in contact, ≤ 4 Å

Adenosine phosphateAMP
drugDrugBank DB00131
Cytidine-5'-TriphosphateCTP
drugDrugBank DB02431within 5 Å only

Pfam Families

PF10385RNA_pol_Rpb2_45

RNA polymerase beta subunit external 1 domain

External Links

ECOD PDB View: 5D4D RCSB PDB: 5D4D PDBe: 5D4D UniProt: Q8RQE9

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.