ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5fg0A1 - ECOD Domain | ECOD

ECOD/Domains/e5fg0A1

e5fg0A1

UID: 001859708

RepresentativePDB

Range: A:14-185,A:205-420
PDB: 5FG0 chain A(all domains)
UniProt: Q04781 (all domains)
Gene: RKR1

Molecule: E3 ubiquitin-protein ligase listerin

3D Structure

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Related Domains

Browse other domains in Ltn1_1st →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupARM repeat(109.4)

TT-groupARM repeat(109.4.1)

FFamilyLtn1_1st(109.4.1.299)

Ligands

in contact, ≤ 4 Å

Potassium ionK
metal

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF22958Ltn1_1st

E3 ubiquitin-protein ligase listerin, N-terminal domain

ClanCL0020TPR

External Links

ECOD PDB View: 5FG0 RCSB PDB: 5FG0 PDBe: 5FG0 UniProt: Q04781

Downloads

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