ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5i4oD1 - ECOD Domain | ECOD

ECOD/Domains/e5i4oD1

e5i4oD1

UID: 001859784

PDB

Range: D:108-263
PDB: 5I4O chain D(all domains)
UniProt: P39900 (all domains)
Gene: MMP12

Molecule: Macrophage metalloelastase

3D Structure

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Related Domains

Browse other domains in Peptidase_M10 →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupZincin-like(2498)

HH-groupMetalloproteases ("zincins") catalytic domain(2498.1)

TT-groupMetalloproteases ("zincins") catalytic domain(2498.1.1)

FFamilyPeptidase_M10(2498.1.1.1)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal
N-({1-[2-(acetylamino)-2-deoxy-beta-D-glucopyranosyl]-1H-1,2,3-triazol-4-yl}methyl)-N-[([1,1'-biphenyl]-4-yl)sulfonyl]-D-valineV28
Zinc ionZN

Pfam Families

PF00413Peptidase_M10

Matrixin

ClanCL0126Peptidase_MA

External Links

ECOD PDB View: 5I4O RCSB PDB: 5I4O PDBe: 5I4O UniProt: P39900

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.