ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5jc9DS1 - ECOD Domain | ECOD

ECOD/Domains/e5jc9DS1

e5jc9DS1

UID: 001860281

PDB

Range: DS:1-103
PDB: 5JC9 chain DS(all domains)
UniProt: P0AG48 (all domains)
Gene: rplU

Molecule: 50S ribosomal protein L21

3D Structure

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Related Domains

Browse other domains in Ribosomal_L21p →

Classification

AArchitecturebeta barrels(a.1)

XX-groupRibosomal protein L21p(4186)

HH-groupRibosomal protein L21p(4186.1)

TT-groupRibosomal protein L21p(4186.1.1)

FFamilyRibosomal_L21p(4186.1.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 3 additives ((4r)-2-Methylpentane-2,4-Diol, Triethylene glycol, Tetraethylene glycol)

(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564
Triethylene glycolPGE
DrugBank DB02327

Pfam Families

PF00829Ribosomal_L21p

Ribosomal prokaryotic L21 protein

External Links

ECOD PDB View: 5JC9 RCSB PDB: 5JC9 PDBe: 5JC9 UniProt: P0AG48

Downloads

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Tetraethylene glycol

Shown in the structure viewer. Drug annotations from DrugDomain.